A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2024-10-08, 16:03 UTC
based on data in:
/data/projet1/projet_tutore/mapping/map_gca/T_septentrionalis
General Statistics
| Sample Name | Total reads | Aligned | Aligned | Uniq aligned | Uniq aligned | Multimapped |
|---|---|---|---|---|---|---|
| SRR3270634_gca | 32.4M | 30.5M | 94.2% | 29.9M | 92.5% | 0.5M |
STAR
Universal RNA-seq aligner.URL: https://github.com/alexdobin/STARDOI: 10.1093/bioinformatics/bts635
Summary Statistics
Summary statistics from the STAR alignment
| Sample Name | Total reads | Aligned | Aligned | Uniq aligned | Uniq aligned | Multimapped | Avg. read len | Avg. mapped len | Splices | Annotated splices | GT/AG splices | GC/AG splices | AT/AC splices | Non-canonical splices | Mismatch rate | Del rate | Del len | Ins rate | Ins len |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR3270634_gca | 32.4M | 30.5M | 94.2% | 29.9M | 92.5% | 0.5M | 180.0bp | 178.2bp | 9.1M | 0.0M | 8.9M | 0.1M | 0.0M | 0.1M | 0.3% | 0.0% | 2.5bp | 0.0% | 1.6bp |